Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| assimilatory sulfite reductase (nadph) flavoprotein subunit | CAY62_RS01025 | Not Available | Positive | 199379 - 201205 | 67395.4 |
| assimilatory sulfite reductase (nadph) hemoprotein subunit | CAY62_RS01030 | Not Available | Positive | 201205 - 202896 | 63082.5 |
| phosphoadenylyl-sulfate reductase | CAY62_RS01035 | Not Available | Positive | 202889 - 203653 | 28989.7 |
| duf4870 family protein | CAY62_RS01040 | Not Available | Positive | 203789 - 204118 | 12252.3 |
| duf2780 domain-containing protein | CAY62_RS01045 | Not Available | Negative | 204278 - 204760 | 16665.9 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | CAY62_RS01050 | Not Available | Negative | 204930 - 205550 | 22026.2 |
| lysm-like peptidoglycan-binding domain-containing protein | CAY62_RS01055 | Not Available | Positive | 205673 - 206515 | 30548.0 |
| bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | CAY62_RS01060 | Not Available | Negative | 206606 - 208573 | 72186.9 |
| siroheme synthase cysg | CAY62_RS01065 | Not Available | Positive | 208973 - 210382 | 51001.9 |
| sulfate adenylyltransferase subunit cysd | CAY62_RS01070 | Not Available | Positive | 210395 - 211303 | 34966.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


