Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bama/tama family outer membrane protein | CAY62_RS00975 | Not Available | Positive | 191072 - 192352 | 47761.3 |
| secondary thiamine-phosphate synthase enzyme yjbq | CAY62_RS00980 | Not Available | Negative | 192450 - 192869 | 15764.8 |
| glucose-6-phosphate isomerase | CAY62_RS00985 | Not Available | Positive | 193103 - 194755 | 61102.4 |
| cold-shock protein | CAY62_RS00990 | Not Available | Negative | 194844 - 195050 | 7435.77 |
| chemotaxis protein chex | CAY62_RS00995 | Not Available | Negative | 195320 - 195781 | 16740.5 |
| zinc uptake transcriptional repressor zur | CAY62_RS01000 | Not Available | Negative | 195812 - 196261 | 16864.3 |
| trna dihydrouridine(20/20a) synthase dusa | CAY62_RS01005 | Not Available | Positive | 196531 - 197511 | 36838.3 |
| envelope stress response protein pspg | CAY62_RS01010 | Not Available | Positive | 197765 - 198004 | 9022.59 |
| tigr04219 family outer membrane beta-barrel protein | CAY62_RS01015 | Not Available | Positive | 198137 - 198760 | 22593.5 |
| hypothetical protein | CAY62_RS01020 | Not Available | Positive | 198968 - 199198 | 8638.05 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


