Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna mismatch repair endonuclease mutl | CAY62_RS00875 | Not Available | Positive | 171077 - 173140 | 76679.9 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | CAY62_RS00880 | Not Available | Positive | 173144 - 174079 | 34831.9 |
| rna chaperone hfq | CAY62_RS00885 | Not Available | Positive | 174166 - 174429 | 9832.92 |
| ribosome rescue gtpase hflx | CAY62_RS00890 | Not Available | Positive | 174456 - 175745 | 48486.1 |
| ftsh protease activity modulator hflk | CAY62_RS00895 | Not Available | Positive | 175799 - 176962 | 42528.0 |
| protease modulator hflc | CAY62_RS00900 | Not Available | Positive | 176965 - 177975 | 38159.6 |
| duf2065 domain-containing protein | CAY62_RS00905 | Not Available | Positive | 178063 - 178257 | 6909.68 |
| adenylosuccinate synthase | CAY62_RS00910 | Not Available | Positive | 178374 - 179690 | 47918.5 |
| flagellar protein motx | CAY62_RS00915 | Not Available | Positive | 179882 - 180511 | 23920.9 |
| no-inducible flavohemoprotein | CAY62_RS00920 | Not Available | Negative | 180574 - 181761 | 44580.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


