Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hybrid sensor histidine kinase/response regulator | CAY62_RS00615 | Not Available | Positive | 130479 - 133961 | 128342.0 |
| sodium:solute symporter family protein | CAY62_RS00620 | Not Available | Negative | 134020 - 135723 | 60969.8 |
| duf4212 domain-containing protein | CAY62_RS00625 | Not Available | Negative | 135733 - 135999 | 10147.5 |
| marc family protein | CAY62_RS00630 | Not Available | Negative | 136178 - 136549 | 13287.1 |
| response regulator | CAY62_RS00635 | Not Available | Negative | 136642 - 137271 | 23046.2 |
| lysr family transcriptional regulator | CAY62_RS00640 | Not Available | Negative | 137397 - 138314 | 34483.5 |
| anaerobic c4-dicarboxylate transporter | CAY62_RS00650 | Not Available | Negative | 138767 - 140074 | 45434.9 |
| aspartate ammonia-lyase | CAY62_RS00655 | Not Available | Negative | 140185 - 141645 | 53025.0 |
| fxsa family protein | CAY62_RS00660 | Not Available | Positive | 142109 - 142633 | 18728.0 |
| mate family efflux transporter | CAY62_RS00665 | Not Available | Negative | 142762 - 144120 | 48817.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


