Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator fis | CAY62_RS00565 | Not Available | Negative | 119586 - 119882 | 11111.4 |
| trna dihydrouridine synthase dusb | CAY62_RS00570 | Not Available | Negative | 119905 - 120870 | 35734.0 |
| 50s ribosomal protein l11 methyltransferase | CAY62_RS00575 | Not Available | Negative | 121047 - 121931 | 32247.2 |
| sodium/pantothenate symporter | CAY62_RS00580 | Not Available | Negative | 122119 - 123576 | 51645.2 |
| yhdt family protein | CAY62_RS00585 | Not Available | Negative | 123569 - 123886 | 12125.8 |
| acetyl-coa carboxylase biotin carboxylase subunit | CAY62_RS00590 | Not Available | Negative | 124089 - 125432 | 49423.7 |
| acetyl-coa carboxylase biotin carboxyl carrier protein | CAY62_RS00595 | Not Available | Negative | 125445 - 125915 | 16399.7 |
| type ii 3-dehydroquinate dehydratase | CAY62_RS00600 | Not Available | Negative | 125945 - 126397 | 16277.5 |
| acetate--coa ligase | CAY62_RS00605 | Not Available | Negative | 126902 - 128851 | 71899.1 |
| 3-phenylpropionate mfs transporter | CAY62_RS00610 | Not Available | Positive | 129161 - 130339 | 42918.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


