Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylamine--glycine ligase | CAY62_RS00515 | Not Available | Negative | 109174 - 110460 | 45762.5 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | CAY62_RS00520 | Not Available | Negative | 110498 - 112096 | 57846.6 |
| zn(2+)-responsive transcriptional regulator | CAY62_RS00525 | Not Available | Positive | 112320 - 112805 | 17955.4 |
| pyrimidine/purine nucleoside phosphorylase | CAY62_RS00530 | Not Available | Positive | 112922 - 113203 | 10120.8 |
| mal regulon transcriptional regulator mali | CAY62_RS00535 | Not Available | Negative | 113369 - 114391 | 36832.7 |
| amino acid abc transporter atp-binding protein | CAY62_RS00540 | Not Available | Positive | 114735 - 115682 | 33206.2 |
| is21-like element helper atpase istb | CAY62_RS00545 | Not Available | Negative | 115750 - 116508 | 28697.8 |
| is21 family transposase | CAY62_RS00550 | Not Available | Negative | 116495 - 117538 | 40000.6 |
| amino acid abc transporter atp-binding protein | CAY62_RS00555 | Not Available | Positive | 117630 - 118262 | 22518.9 |
| maly/patb family protein | CAY62_RS00560 | Not Available | Positive | 118315 - 119487 | 44213.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


