Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-directed rna polymerase subunit beta' | CAY62_RS00465 | Not Available | Positive | 96040 - 100257 | 155295.0 |
| sigma d regulator | CAY62_RS00470 | Not Available | Negative | 100391 - 100870 | 18376.8 |
| nad(+) diphosphatase | CAY62_RS00475 | Not Available | Positive | 101028 - 101810 | 29386.6 |
| uroporphyrinogen decarboxylase | CAY62_RS00480 | Not Available | Positive | 101981 - 103048 | 39583.9 |
| d-2-hydroxyacid dehydrogenase | CAY62_RS00485 | Not Available | Negative | 103199 - 104110 | 34333.9 |
| yjag family protein | CAY62_RS00490 | Not Available | Positive | 104172 - 104759 | 22397.0 |
| branched-chain amino acid transport system ii carrier protein | CAY62_RS00495 | Not Available | Positive | 105321 - 106643 | 46408.1 |
| cnnm domain-containing protein | CAY62_RS00500 | Not Available | Negative | 106752 - 107807 | 39303.9 |
| nucleoid-associated protein hu-alpha | CAY62_RS00505 | Not Available | Positive | 108037 - 108309 | 9445.35 |
| duf1481 domain-containing protein | CAY62_RS00510 | Not Available | Positive | 108353 - 109045 | 25747.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


