Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid abc transporter atp-binding protein | CAY62_RS00365 | Not Available | Positive | 78075 - 79382 | 49955.9 |
| is4 family transposase | CAY62_RS00370 | Not Available | Positive | 79651 - 80958 | 50175.0 |
| isochorismatase family protein | CAY62_RS00375 | Not Available | Negative | 81008 - 81646 | 23360.0 |
| cdp-diacylglycerol--serine o-phosphatidyltransferase | CAY62_RS00380 | Not Available | Negative | 81657 - 83006 | 51537.1 |
| gnat family n-acetyltransferase | CAY62_RS00385 | Not Available | Negative | 83123 - 83551 | 16671.1 |
| udp-n-acetylmuramate dehydrogenase | CAY62_RS00390 | Not Available | Positive | 83627 - 84664 | 37735.1 |
| bifunctional biotin--[acetyl-coa-carboxylase] ligase/biotin operon repressor bira | CAY62_RS00395 | Not Available | Positive | 84661 - 85617 | 34758.1 |
| type iii pantothenate kinase | CAY62_RS00400 | Not Available | Positive | 85617 - 86351 | 27186.0 |
| Trna-thr | Not Available | Not Available | Positive | 86448 - 86523 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 86539 - 86623 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


