Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3'(2'),5'-bisphosphate nucleotidase cysq | CAY62_RS00205 | Not Available | Positive | 45564 - 46388 | 30339.4 |
| si-specific nad(p)(+) transhydrogenase | CAY62_RS00210 | Not Available | Negative | 46486 - 47901 | 51863.6 |
| hth-type transcriptional repressor fabr | CAY62_RS00215 | Not Available | Positive | 48210 - 48842 | 23930.7 |
| yijd family membrane protein | CAY62_RS00220 | Not Available | Positive | 48866 - 49246 | 14025.5 |
| trna (uridine(54)-c5)-methyltransferase trma | CAY62_RS00225 | Not Available | Negative | 49315 - 50421 | 43077.2 |
| tonb-dependent receptor domain-containing protein | CAY62_RS00230 | Not Available | Positive | 50808 - 52637 | 67788.5 |
| atpase | CAY62_RS00235 | Not Available | Positive | 52688 - 53359 | 25311.3 |
| glutamate racemase | CAY62_RS00240 | Not Available | Positive | 53417 - 54238 | 29808.6 |
| rna recognition motif domain-containing protein | CAY62_RS00245 | Not Available | Negative | 54207 - 54659 | 16466.1 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 55121 - 56672 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


