Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system inner membrane protein gspf | CAY62_RS00155 | Not Available | Positive | 38174 - 39394 | 45042.9 |
| type ii secretion system major pseudopilin gspg | CAY62_RS00160 | Not Available | Positive | 39418 - 39858 | 16088.1 |
| type ii secretion system minor pseudopilin gsph | CAY62_RS00165 | Not Available | Positive | 39865 - 40446 | 22268.8 |
| type ii secretion system minor pseudopilin gspi | CAY62_RS00170 | Not Available | Positive | 40443 - 40805 | 13235.0 |
| type ii secretion system minor pseudopilin gspj | CAY62_RS00175 | Not Available | Positive | 40789 - 41445 | 24937.7 |
| type ii secretion system minor pseudopilin gspk | CAY62_RS00180 | Not Available | Positive | 41445 - 42449 | 37053.0 |
| type ii secretion system protein gspl | CAY62_RS00185 | Not Available | Positive | 42418 - 43719 | 49120.7 |
| type ii secretion system protein m | CAY62_RS00190 | Not Available | Positive | 43716 - 44195 | 18050.8 |
| type ii secretion system protein n | CAY62_RS00195 | Not Available | Positive | 44197 - 44958 | 27253.6 |
| adp compounds hydrolase nude | CAY62_RS00200 | Not Available | Positive | 45004 - 45564 | 20823.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


