Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| virulence factor brkb family protein | CAY62_RS00105 | Not Available | Positive | 25679 - 26599 | 33865.9 |
| d-aminoacyl-trna deacylase | CAY62_RS00110 | Not Available | Positive | 26596 - 27033 | 15664.8 |
| bifunctional gnat family n-acetyltransferase/hotdog fold thioesterase | CAY62_RS00115 | Not Available | Positive | 27073 - 27990 | 35000.2 |
| asma family protein | CAY62_RS00120 | Not Available | Negative | 27948 - 29903 | 74599.2 |
| phosphoenolpyruvate carboxykinase (atp) | CAY62_RS00125 | Not Available | Negative | 30078 - 31709 | 60013.9 |
| hsp33 family molecular chaperone hslo | CAY62_RS00130 | Not Available | Negative | 32034 - 32912 | 32354.0 |
| ribosome-associated heat shock protein hsp15 | CAY62_RS00135 | Not Available | Negative | 33036 - 33443 | 15465.4 |
| type ii secretion system protein gspc | CAY62_RS00140 | Not Available | Positive | 33738 - 34619 | 32305.9 |
| type ii secretion system secretin gspd | CAY62_RS00145 | Not Available | Positive | 34659 - 36668 | 73003.0 |
| type ii secretion system atpase gspe | CAY62_RS00150 | Not Available | Positive | 36668 - 38173 | 55666.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


