Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3069 domain-containing protein | CAY62_RS19770 | Not Available | Negative | 1094652 - 1095104 | 17349.6 |
| yceh family protein | CAY62_RS19775 | Not Available | Positive | 1095404 - 1096060 | 24600.5 |
| giy-yig nuclease family protein | CAY62_RS19780 | Not Available | Positive | 1096240 - 1096557 | 12471.2 |
| yaeq family protein | CAY62_RS19785 | Not Available | Positive | 1096697 - 1097236 | 20794.7 |
| ydcf family protein | CAY62_RS19790 | Not Available | Positive | 1097321 - 1097968 | 24079.8 |
| thioredoxin domain-containing protein | CAY62_RS19795 | Not Available | Negative | 1098131 - 1098916 | 28988.5 |
| acid phosphatase apha | CAY62_RS19800 | Not Available | Positive | 1099224 - 1099949 | 26905.9 |
| sensor domain-containing diguanylate cyclase | CAY62_RS19805 | Not Available | Negative | 1100016 - 1101317 | 48815.3 |
| is256 family transposase | CAY62_RS19810 | Not Available | Positive | 1101492 - 1102700 | 46566.9 |
| exoribonuclease ii | CAY62_RS19815 | Not Available | Negative | 1102900 - 1104903 | 75793.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


