Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conserved phage c-terminal domain-containing protein | CAY62_RS19495 | Not Available | Positive | 1029475 - 1030326 | 31422.5 |
| replication protein p | CAY62_RS19500 | Not Available | Positive | 1030349 - 1031008 | 25371.4 |
| hypothetical protein | CAY62_RS19505 | Not Available | Positive | 1031001 - 1031555 | 21366.2 |
| duf1367 family protein | CAY62_RS19510 | Not Available | Positive | 1031555 - 1032142 | 22287.8 |
| hypothetical protein | CAY62_RS19515 | Not Available | Positive | 1032508 - 1032867 | 13825.1 |
| nuclease domain-containing protein | CAY62_RS19520 | Not Available | Positive | 1032906 - 1033262 | 13335.2 |
| gfo/idh/moca family protein | CAY62_RS19525 | Not Available | Negative | 1033269 - 1034246 | 36717.8 |
| dmt family transporter | CAY62_RS19530 | Not Available | Negative | 1034234 - 1035157 | 34390.4 |
| is3 family transposase | CAY62_RS19540 | Not Available | Positive | 1035836 - 1037013 | 45482.1 |
| is110 family transposase | CAY62_RS19545 | Not Available | Positive | 1037203 - 1038195 | 37299.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


