Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | CAY62_RS19300 | Not Available | Negative | 990182 - 990850 | 23522.1 |
| lysr family transcriptional regulator | CAY62_RS19305 | Not Available | Positive | 990971 - 991909 | 35162.0 |
| outer membrane beta-barrel protein | CAY62_RS19310 | Not Available | Negative | 991945 - 992517 | 21204.9 |
| hypothetical protein | CAY62_RS19315 | Not Available | Negative | 992607 - 993185 | 22046.8 |
| duf294 nucleotidyltransferase-like domain-containing protein | CAY62_RS19320 | Not Available | Positive | 993514 - 995391 | 70822.4 |
| 3'-5' exonuclease | CAY62_RS19325 | Not Available | Positive | 995388 - 996137 | 28140.6 |
| bcct family transporter | CAY62_RS19330 | Not Available | Positive | 996326 - 997990 | 59543.4 |
| udp-glucose 4-epimerase gale | CAY62_RS19335 | Not Available | Positive | 998222 - 999241 | 36729.8 |
| udp-glucose--hexose-1-phosphate uridylyltransferase | CAY62_RS19340 | Not Available | Positive | 999320 - 1000372 | 40547.8 |
| galactokinase | CAY62_RS19345 | Not Available | Positive | 1000471 - 1001631 | 42308.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


