Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6-carboxytetrahydropterin synthase | CAY62_RS19060 | Not Available | Positive | 948765 - 949643 | 32987.3 |
| hypothetical protein | CAY62_RS19065 | Not Available | Positive | 949817 - 950191 | 13238.4 |
| lon protease family protein | CAY62_RS19070 | Not Available | Positive | 950814 - 953186 | 88653.6 |
| peptide-methionine (s)-s-oxide reductase msra | CAY62_RS19075 | Not Available | Negative | 953262 - 953891 | 23292.4 |
| sensor domain-containing diguanylate cyclase | CAY62_RS19080 | Not Available | Negative | 953909 - 956065 | 83624.1 |
| pyridoxal kinase pdxy | CAY62_RS19085 | Not Available | Negative | 956272 - 957126 | 30931.3 |
| cold shock domain-containing protein | CAY62_RS19090 | Not Available | Positive | 957864 - 958064 | 7197.65 |
| Trna-ser | Not Available | Not Available | Positive | 958273 - 958363 | Not Available |
| rna methyltransferase | CAY62_RS19100 | Not Available | Negative | 958449 - 958997 | 20033.7 |
| hypothetical protein | CAY62_RS19105 | Not Available | Negative | 959097 - 959654 | 20772.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


