Nitrosospira lacus strain APG3

Gram-negativeMotileaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Nitrosomonadaceae

Genus

Nitrosospira

Description

Nitrosospira lacus strain APG3 is a Gram-negative bacterium that is notable for its aerobic lifestyle. This strain is found in diverse habitats, including aerobic agricultural surface soils and freshwater lake sediments, indicating its adaptability to both terrestrial and aquatic environments. Nitrosospira lacus strain APG3 is characterized by its motility, facilitated by the presence of flagella, which allows for movement within its ecological niches. The strain exhibits a free-living biotic relationship, meaning it does not rely on a host for survival and is not pathogenic, thus posing no threat to human health or other organisms. It is also nonsporulating, which suggests that it does not form spores as a means of survival under adverse conditions. Genetically, Nitrosospira lacus strain APG3 is notable for having a single replicon, with its genomic information cataloged under accession number NZ_CP021106.3. This genetic simplicity may contribute to its efficient adaptation and survival mechanisms in its various habitats. Ecologically, the presence of Nitrosospira lacus strain APG3 in soil and sediment environments highlights its potential role in nitrogen cycling processes. As a free-living aerobic organism, it may contribute to the oxidation of ammonia, thus playing a part in the overall nutrient dynamics and ecosystem functioning within its habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilyNitrosomonadaceae
GenusNitrosospira
SpeciesNitrosospira lacus
Strainstrain APG3

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitataerobic agricultural surface soils; freshwater lake sediment; terrestrial niche
Biotic relationshipFree-living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNon-pathogenic

Genome Summary

Nitrosospira lacus strain APG3 chromosome, complete genome.

Gene Summary

Adenine Count

761258 bp

Thymine Count

750491 bp

Guanine Count

874564 bp

Cytosine Count

874775 bp

Genome Length

3261088 bp

Protein-coding Genes

2846 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zip family metal transporterEBAPG3_RS13160Not AvailablePositive2888011 - 288881728955.9
30s ribosomal protein s12 methylthiotransferase rimoEBAPG3_RS13165Not AvailablePositive2888928 - 289026549260.4
hypothetical proteinEBAPG3_RS13170Not AvailablePositive2890478 - 289095717933.8
mlae family abc transporter permeaseEBAPG3_RS13175Not AvailablePositive2891764 - 289289740546.5
abc transporter atp-binding proteinEBAPG3_RS13180Not AvailablePositive2892906 - 289368828590.3
mlad family proteinEBAPG3_RS13185Not AvailablePositive2893698 - 289462133098.6
abc-type transport auxiliary lipoprotein family proteinEBAPG3_RS13190Not AvailablePositive2894618 - 289525622957.3
duf4197 domain-containing proteinEBAPG3_RS13195Not AvailableNegative2895504 - 289622325804.2
lipoyl synthaseEBAPG3_RS13200Not AvailableNegative2896274 - 289721835266.7
lipoyl(octanoyl) transferase lipbEBAPG3_RS13205Not AvailableNegative2897351 - 289795922525.5

Displaying genes 2601 – 2610 of 2932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.