Nitrosospira lacus strain APG3

Gram-negativeMotileaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Nitrosomonadaceae

Genus

Nitrosospira

Description

Nitrosospira lacus strain APG3 is a Gram-negative bacterium that is notable for its aerobic lifestyle. This strain is found in diverse habitats, including aerobic agricultural surface soils and freshwater lake sediments, indicating its adaptability to both terrestrial and aquatic environments. Nitrosospira lacus strain APG3 is characterized by its motility, facilitated by the presence of flagella, which allows for movement within its ecological niches. The strain exhibits a free-living biotic relationship, meaning it does not rely on a host for survival and is not pathogenic, thus posing no threat to human health or other organisms. It is also nonsporulating, which suggests that it does not form spores as a means of survival under adverse conditions. Genetically, Nitrosospira lacus strain APG3 is notable for having a single replicon, with its genomic information cataloged under accession number NZ_CP021106.3. This genetic simplicity may contribute to its efficient adaptation and survival mechanisms in its various habitats. Ecologically, the presence of Nitrosospira lacus strain APG3 in soil and sediment environments highlights its potential role in nitrogen cycling processes. As a free-living aerobic organism, it may contribute to the oxidation of ammonia, thus playing a part in the overall nutrient dynamics and ecosystem functioning within its habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilyNitrosomonadaceae
GenusNitrosospira
SpeciesNitrosospira lacus
Strainstrain APG3

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitataerobic agricultural surface soils; freshwater lake sediment; terrestrial niche
Biotic relationshipFree-living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNon-pathogenic

Genome Summary

Nitrosospira lacus strain APG3 chromosome, complete genome.

Gene Summary

Adenine Count

761258 bp

Thymine Count

750491 bp

Guanine Count

874564 bp

Cytosine Count

874775 bp

Genome Length

3261088 bp

Protein-coding Genes

2846 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein translocase subunit secdEBAPG3_RS00550Not AvailableNegative122823 - 12471868446.8
preprotein translocase subunit yajcEBAPG3_RS00555Not AvailableNegative124800 - 12513211857.7
trna guanosine(34) transglycosylase tgtEBAPG3_RS00560Not AvailableNegative125169 - 12627841374.9
trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase queaEBAPG3_RS00565Not AvailableNegative126483 - 12751737967.7
Trna-leuNot AvailableNot AvailablePositive127598 - 127684Not Available
integrase core domain-containing proteinEBAPG3_RS15325Not AvailableNegative127856 - 1280787938.39
hypothetical proteinEBAPG3_RS14855Not AvailableNegative128176 - 12846910731.8
hypothetical proteinEBAPG3_RS00580Not AvailablePositive129363 - 13013626999.4
bon domain-containing proteinEBAPG3_RS00585Not AvailableNegative130319 - 13064811574.0
Trna-metNot AvailableNot AvailablePositive130958 - 131033Not Available

Displaying genes 161 – 170 of 2932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.