Nitrosospira lacus strain APG3

Gram-negativeMotileaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Nitrosomonadaceae

Genus

Nitrosospira

Description

Nitrosospira lacus strain APG3 is a Gram-negative bacterium that is notable for its aerobic lifestyle. This strain is found in diverse habitats, including aerobic agricultural surface soils and freshwater lake sediments, indicating its adaptability to both terrestrial and aquatic environments. Nitrosospira lacus strain APG3 is characterized by its motility, facilitated by the presence of flagella, which allows for movement within its ecological niches. The strain exhibits a free-living biotic relationship, meaning it does not rely on a host for survival and is not pathogenic, thus posing no threat to human health or other organisms. It is also nonsporulating, which suggests that it does not form spores as a means of survival under adverse conditions. Genetically, Nitrosospira lacus strain APG3 is notable for having a single replicon, with its genomic information cataloged under accession number NZ_CP021106.3. This genetic simplicity may contribute to its efficient adaptation and survival mechanisms in its various habitats. Ecologically, the presence of Nitrosospira lacus strain APG3 in soil and sediment environments highlights its potential role in nitrogen cycling processes. As a free-living aerobic organism, it may contribute to the oxidation of ammonia, thus playing a part in the overall nutrient dynamics and ecosystem functioning within its habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilyNitrosomonadaceae
GenusNitrosospira
SpeciesNitrosospira lacus
Strainstrain APG3

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitataerobic agricultural surface soils; freshwater lake sediment; terrestrial niche
Biotic relationshipFree-living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNon-pathogenic

Genome Summary

Nitrosospira lacus strain APG3 chromosome, complete genome.

Gene Summary

Adenine Count

761258 bp

Thymine Count

750491 bp

Guanine Count

874564 bp

Cytosine Count

874775 bp

Genome Length

3261088 bp

Protein-coding Genes

2846 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cysteine desulfuraseEBAPG3_RS05665Not AvailablePositive1285456 - 128671546153.0
fe-s cluster assembly sulfur transfer protein sufuEBAPG3_RS05670Not AvailablePositive1286715 - 128719717379.6
nifu family proteinEBAPG3_RS05675Not AvailablePositive1287218 - 128777820040.4
duf488 domain-containing proteinEBAPG3_RS05680Not AvailableNegative1287810 - 128816013734.5
hypothetical proteinEBAPG3_RS15145Not AvailablePositive1288249 - 12884015411.97
protoporphyrinogen oxidase hemjEBAPG3_RS05690Not AvailablePositive1288452 - 128886516086.3
3-dehydroquinate synthaseEBAPG3_RS05695Not AvailablePositive1288991 - 129009139796.4
deoxyguanosinetriphosphate triphosphohydrolaseEBAPG3_RS05700Not AvailablePositive1290084 - 129120542697.9
uroporphyrinogen decarboxylaseEBAPG3_RS05705Not AvailablePositive1291586 - 129265339307.4
response regulator transcription factorEBAPG3_RS05710Not AvailablePositive1292927 - 129361024874.2

Displaying genes 1181 – 1190 of 2932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.