Nitrosospira lacus strain APG3

Gram-negativeMotileaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Nitrosomonadaceae

Genus

Nitrosospira

Description

Nitrosospira lacus strain APG3 is a Gram-negative bacterium that is notable for its aerobic lifestyle. This strain is found in diverse habitats, including aerobic agricultural surface soils and freshwater lake sediments, indicating its adaptability to both terrestrial and aquatic environments. Nitrosospira lacus strain APG3 is characterized by its motility, facilitated by the presence of flagella, which allows for movement within its ecological niches. The strain exhibits a free-living biotic relationship, meaning it does not rely on a host for survival and is not pathogenic, thus posing no threat to human health or other organisms. It is also nonsporulating, which suggests that it does not form spores as a means of survival under adverse conditions. Genetically, Nitrosospira lacus strain APG3 is notable for having a single replicon, with its genomic information cataloged under accession number NZ_CP021106.3. This genetic simplicity may contribute to its efficient adaptation and survival mechanisms in its various habitats. Ecologically, the presence of Nitrosospira lacus strain APG3 in soil and sediment environments highlights its potential role in nitrogen cycling processes. As a free-living aerobic organism, it may contribute to the oxidation of ammonia, thus playing a part in the overall nutrient dynamics and ecosystem functioning within its habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilyNitrosomonadaceae
GenusNitrosospira
SpeciesNitrosospira lacus
Strainstrain APG3

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitataerobic agricultural surface soils; freshwater lake sediment; terrestrial niche
Biotic relationshipFree-living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNon-pathogenic

Genome Summary

Nitrosospira lacus strain APG3 chromosome, complete genome.

Gene Summary

Adenine Count

761258 bp

Thymine Count

750491 bp

Guanine Count

874564 bp

Cytosine Count

874775 bp

Genome Length

3261088 bp

Protein-coding Genes

2846 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pep-cterm sorting domain-containing proteinEBAPG3_RS15265Not AvailablePositive1211826 - 121230814516.4
transglycosylase slt domain-containing proteinEBAPG3_RS05360Not AvailableNegative1212401 - 121387954793.2
preq(1) synthaseEBAPG3_RS05365Not AvailableNegative1214009 - 121442815879.3
chromosome segregation protein smcEBAPG3_RS05370Not AvailablePositive1214543 - 1218085133738.0
cell division protein zipa c-terminal ftsz-binding domain-containing proteinEBAPG3_RS05375Not AvailablePositive1218100 - 121928743097.4
nad-dependent dna ligase ligaEBAPG3_RS05380Not AvailablePositive1219288 - 122137576622.9
utp--glucose-1-phosphate uridylyltransferase galuEBAPG3_RS05385Not AvailablePositive1221388 - 122227232045.9
hypoxanthine-guanine phosphoribosyltransferaseEBAPG3_RS05390Not AvailablePositive1222312 - 122286320296.5
s-methyl-5'-thioinosine phosphorylaseEBAPG3_RS05395Not AvailablePositive1223009 - 122375527044.6
peptide deformylaseEBAPG3_RS05400Not AvailablePositive1223745 - 122427820089.3

Displaying genes 1121 – 1130 of 2932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.