Nitrosospira lacus strain APG3

Gram-negativeMotileaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Nitrosomonadaceae

Genus

Nitrosospira

Description

Nitrosospira lacus strain APG3 is a Gram-negative bacterium that is notable for its aerobic lifestyle. This strain is found in diverse habitats, including aerobic agricultural surface soils and freshwater lake sediments, indicating its adaptability to both terrestrial and aquatic environments. Nitrosospira lacus strain APG3 is characterized by its motility, facilitated by the presence of flagella, which allows for movement within its ecological niches. The strain exhibits a free-living biotic relationship, meaning it does not rely on a host for survival and is not pathogenic, thus posing no threat to human health or other organisms. It is also nonsporulating, which suggests that it does not form spores as a means of survival under adverse conditions. Genetically, Nitrosospira lacus strain APG3 is notable for having a single replicon, with its genomic information cataloged under accession number NZ_CP021106.3. This genetic simplicity may contribute to its efficient adaptation and survival mechanisms in its various habitats. Ecologically, the presence of Nitrosospira lacus strain APG3 in soil and sediment environments highlights its potential role in nitrogen cycling processes. As a free-living aerobic organism, it may contribute to the oxidation of ammonia, thus playing a part in the overall nutrient dynamics and ecosystem functioning within its habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilyNitrosomonadaceae
GenusNitrosospira
SpeciesNitrosospira lacus
Strainstrain APG3

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitataerobic agricultural surface soils; freshwater lake sediment; terrestrial niche
Biotic relationshipFree-living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNon-pathogenic

Genome Summary

Nitrosospira lacus strain APG3 chromosome, complete genome.

Gene Summary

Adenine Count

761258 bp

Thymine Count

750491 bp

Guanine Count

874564 bp

Cytosine Count

874775 bp

Genome Length

3261088 bp

Protein-coding Genes

2846 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf167 domain-containing proteinEBAPG3_RS05050Not AvailableNegative1140591 - 114092012094.8
yggt family proteinEBAPG3_RS05055Not AvailableNegative1140965 - 114153721273.4
pyrroline-5-carboxylate reductaseEBAPG3_RS05060Not AvailableNegative1141575 - 114238728541.3
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseEBAPG3_RS05065Not AvailableNegative1142648 - 114346330261.6
gldg family proteinEBAPG3_RS05070Not AvailableNegative1143491 - 114484050113.0
abc transporter permeaseEBAPG3_RS05075Not AvailableNegative1144854 - 114560026789.9
abc transporter atp-binding proteinEBAPG3_RS05080Not AvailableNegative1145597 - 114635827903.8
tetratricopeptide repeat proteinEBAPG3_RS05090Not AvailablePositive1146756 - 114847764088.1
lipoprotein insertase outer membrane protein lolbEBAPG3_RS05095Not AvailablePositive1148659 - 114918019270.1
4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinaseEBAPG3_RS05100Not AvailablePositive1149197 - 115004530913.6

Displaying genes 1061 – 1070 of 2932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.