Sedimentisphaera salicampi strain ST-PulAB-D4

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Phycisphaerae

Order

Sedimentisphaerales

Family

Sedimentisphaeraceae

Genus

Sedimentisphaera

Description

Sedimentisphaera salicampi strain ST-PulAB-D4 is characterized by having a single replicon, which indicates a streamlined genomic organization. The strain is cataloged under the accession number NZ_CP021023.1, facilitating its identification and further study within microbial databases. The classification of Sedimentisphaera salicampi suggests its role in specific ecological niches, particularly in environments where it interacts with sediment. This strain is likely involved in biogeochemical processes given its association with sedimentary habitats. Such environments can be crucial for nutrient cycling and the breakdown of organic materials, which are essential for ecosystem health. Understanding the genomic structure and traits of Sedimentisphaera salicampi strain ST-PulAB-D4 can provide insights into its metabolic capabilities and ecological functions. The presence of a single replicon may reflect adaptations that allow for efficient resource utilization and survival in competitive environments. This efficiency is particularly relevant in sediment ecosystems, where microbial interactions play a significant role in maintaining ecological balance. In summary, the traits of Sedimentisphaera salicampi strain ST-PulAB-D4 highlight its potential ecological significance, particularly in sedimentary environments where its metabolic activities may contribute to nutrient cycling and overall ecosystem function.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassPhycisphaerae
OrderSedimentisphaerales
FamilySedimentisphaeraceae
GenusSedimentisphaera
SpeciesSedimentisphaera salicampi
Strainstrain ST-PulAB-D4

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sedimentisphaera salicampi strain ST-PulAB-D4 chromosome, complete

Gene Summary

Adenine Count

852708 bp

Thymine Count

861120 bp

Guanine Count

735525 bp

Cytosine Count

742940 bp

Genome Length

3192293 bp

Protein-coding Genes

2377 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
non-hydrolyzing udp-n-acetylglucosamine 2-epimeraseSTSP1_RS06405Not AvailablePositive1696521 - 169761540074.8
3-deoxy-7-phosphoheptulonate synthaseSTSP1_RS06410Not AvailablePositive1697713 - 169873236581.5
Ncrna_class:srp_rnaNot AvailableNot AvailablePositive1698746 - 1698843Not Available
tetr/acrr family transcriptional regulatorSTSP1_RS06420Not AvailablePositive1699177 - 169981824375.2
efflux rnd transporter periplasmic adaptor subunitSTSP1_RS06425Not AvailablePositive1699843 - 170093139642.9
efflux rnd transporter permease subunitSTSP1_RS06430Not AvailablePositive1700941 - 1703979112995.0
tolc family proteinSTSP1_RS06435Not AvailablePositive1703995 - 170532048744.0
abc transporter atp-binding proteinSTSP1_RS06440Not AvailableNegative1705321 - 170611829906.2
histidinol dehydrogenaseSTSP1_RS06445Not AvailableNegative1706136 - 170744647588.3
lpxi family proteinSTSP1_RS06450Not AvailableNegative1707484 - 170833230948.8

Displaying genes 1271 – 1280 of 2434 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.