Marinobacter salarius strain SMR5

RodMotileaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Marinobacteraceae

Genus

Marinobacter

Description

Marinobacter salarius strain SMR5 is a Gram-negative, aerobic bacterium characterized by its rod shape and motility, attributed to the presence of flagella. This strain was isolated from Chazhma Bay, located in the Gulf of Peter the Great, which is part of the Pacific Ocean and the Sea of Japan. The bacterium has two replicons, indicating a potential for genetic diversity and adaptability in its marine environment. The ecological significance of Marinobacter salarius strain SMR5 lies in its adaptation to marine habitats, where it may play a role in biogeochemical cycles, particularly in nutrient cycling within the coastal ecosystems. Its aerobic nature suggests that it could be involved in processes that require oxygen, contributing to the breakdown of organic matter and possibly influencing the overall health of its marine habitat. The specific traits of strain SMR5 underscore its potential importance in marine microbiology, particularly in understanding microbial dynamics in oceanic environments. The accessions NZ_CP020931.1 and NZ_CP020932.1 provide valuable genetic information for further research into this strain's functional capabilities and ecological roles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyMarinobacteraceae
GenusMarinobacter
SpeciesMarinobacter salarius
Strainstrain SMR5

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Marinobacter salarius strain SMR5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatChazhma Bay; Gulf of Peter the Great; Marine; Pacific Ocean; Sea of Japan
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Marinobacter salarius strain SMR5 plasmid pSMR5, complete

Gene Summary

Adenine Count

51346 bp

Thymine Count

61375 bp

Guanine Count

65337 bp

Cytosine Count

65210 bp

Genome Length

243268 bp

Protein-coding Genes

250 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trap transporter large permease subunitMARSALSMR5_RS05645Not AvailablePositive1266936 - 126822846076.7
cache domain-containing proteinMARSALSMR5_RS05650Not AvailablePositive1268422 - 126977150570.3
response regulator transcription factorMARSALSMR5_RS05655Not AvailablePositive1269826 - 127046723987.1
duf72 domain-containing proteinMARSALSMR5_RS05660Not AvailableNegative1270469 - 127131432024.4
carboxymuconolactone decarboxylase family proteinMARSALSMR5_RS05665Not AvailablePositive1271459 - 127191116740.8
sigma-70 family rna polymerase sigma factorMARSALSMR5_RS05670Not AvailablePositive1271937 - 127283033382.6
nnru family proteinMARSALSMR5_RS05675Not AvailableNegative1272835 - 127340420500.0
hypothetical proteinMARSALSMR5_RS05680Not AvailablePositive1273516 - 127389013820.6
dimethylsulfonioproprionate lyase family proteinMARSALSMR5_RS05685Not AvailablePositive1274009 - 127465924760.4
shlb/fhac/hecb family hemolysin secretion/activation proteinMARSALSMR5_RS05690Not AvailableNegative1274717 - 127613251664.5

Displaying genes 1451 – 1460 of 4282 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

299 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000419S-formylmycothiolC18H30N2O13SChemical structure of S-formylmycothiolNot available
Average514.5Da
Monoisotopic514.146860208Da
BASm00004323,5-dichlorocatecholC6H4Cl2O2Chemical structure of 3,5-dichlorocatecholNot available
Average179.001Da
Monoisotopic177.9588348Da
BASm0000590phloretateC9H9O3Chemical structure of phloretateNot available
Average165.169Da
Monoisotopic165.05571773Da

Displaying 1–10 of 299 metabolites

Health Effects

No health effects information available for this bacterium.