Rhodothermaceae bacterium RA

Kingdom

Pseudomonadati

Phylum

Rhodothermota

Class

Rhodothermia

Order

Rhodothermales

Family

Rhodothermaceae

Genus

Description

Rhodothermaceae bacterium RA is a member of the family Rhodothermaceae, characterized by a single replicon. Its genome is cataloged under the accession number NZ_CP020382.1. This bacterium is of particular interest within the context of microbial diversity and ecological roles, given its unique taxonomic placement. Rhodothermaceae members are known to inhabit extreme environments, which may inform their metabolic pathways and adaptability. The single replicon structure indicates a streamlined genomic organization, potentially facilitating efficient replication and resource utilization in its niche. Understanding the genomic features of Rhodothermaceae bacterium RA can contribute to insights into the evolutionary adaptations of bacteria in extreme conditions. As members of the Rhodothermaceae family are often involved in biogeochemical cycles, studying this organism may reveal its role in ecosystem functions, such as nutrient cycling or its interactions with other microbial communities. Overall, Rhodothermaceae bacterium RA exemplifies the diversity of life forms in extreme habitats and highlights the importance of genomic studies in uncovering the ecological dynamics of microorganisms. Further research into its specific functions and interactions within its environment may yield valuable information regarding its ecological contributions.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodothermaceae bacterium RA chromosome, complete genome.

Gene Summary

Adenine Count

735352 bp

Thymine Count

741650 bp

Guanine Count

1590139 bp

Cytosine Count

1586081 bp

Genome Length

4653222 bp

Protein-coding Genes

3687 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gwxtd domain-containing proteinAWN76_RS00295Not AvailablePositive65493 - 6690852888.1
fmdb family zinc ribbon proteinAWN76_RS00300Not AvailableNegative66995 - 6728510112.5
glycoside hydrolase family 3 n-terminal domain-containing proteinAWN76_RS00305Not AvailableNegative67443 - 70364106643.0
hamp domain-containing sensor histidine kinaseAWN76_RS00310P40719Negative70479 - 7197854413.5
response regulator transcription factorAWN76_RS00315A3Q5L9Negative71971 - 7268726851.4
efflux rnd transporter periplasmic adaptor subunitAWN76_RS00320C9XVZ5Positive72953 - 7411641372.6
efflux rnd transporter permease subunitAWN76_RS00325P94177Positive74134 - 77277114913.0
tolc family proteinAWN76_RS00330Not AvailablePositive77310 - 7856347363.4
mfs transporterAWN76_RS00335O31563Positive78864 - 8027047707.0
rlua family pseudouridine synthaseAWN76_RS00340Q5Z8P2Negative80337 - 8141339811.7

Displaying genes 61 – 70 of 3737 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

207 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 207 metabolites

Health Effects

No health effects information available for this bacterium.