Rhodopseudomonas palustris strain YSC3

BacilliMotilefacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Rhodopseudomonas

Description

Rhodopseudomonas palustris strain YSC3 is a gram-negative, bacilli-shaped bacterium that demonstrates mobility via the presence of flagella. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic conditions. It exhibits a versatile habitat preference, being found in aquatic environments, particularly in stratified aquatic settings, as well as in terrestrial locations. The optimal growth temperature for R. palustris strain YSC3 is 25°C, positioning it within the mesophilic temperature range, which is conducive to its metabolic processes. The organism is characterized by a single replicon, indicative of its genomic structure. As a free-living bacterium, R. palustromonas strain YSC3 plays a role in its ecosystem as an independent organism, interacting with various environmental factors. The ecological significance of R. palustris strain YSC3 lies in its adaptability to diverse habitats and its ability to perform photosynthesis under varying oxygen conditions. This versatility not only supports its survival but may also contribute to nutrient cycling and energy flow within aquatic and terrestrial ecosystems. The strain’s genetic material is cataloged under the accession NZ_CP019967.1, providing a reference for further studies on its physiology and ecological roles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusRhodopseudomonas
SpeciesRhodopseudomonas palustris
Strainstrain YSC3

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Rhodopseudomonas palustris strain YSC3
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperature25
Temperature rangeMesophilic
Habitataquatic; stratified aquatic environments; terrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodopseudomonas palustris strain YSC3 chromosome, complete

Gene Summary

Adenine Count

933314 bp

Thymine Count

938056 bp

Guanine Count

1753147 bp

Cytosine Count

1747299 bp

Genome Length

5371816 bp

Protein-coding Genes

4905 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methyl-accepting chemotaxis proteinRPYSC3_RS19250Not AvailableNegative4165500 - 416720359049.0
cache domain-containing proteinRPYSC3_RS19255Not AvailableNegative4167257 - 416771516318.8
transglutaminase n-terminal domain-containing proteinRPYSC3_RS19260Not AvailableNegative4167913 - 416879131868.1
circularly permuted type 2 atp-grasp proteinRPYSC3_RS19265Not AvailableNegative4168788 - 417128990812.4
duf2126 domain-containing proteinRPYSC3_RS19270Not AvailableNegative4171315 - 4174656124640.0
hpch/hpai aldolase family proteinRPYSC3_RS19275Not AvailableNegative4174892 - 417566827866.6
malate/lactate/ureidoglycolate dehydrogenaseRPYSC3_RS19280Not AvailableNegative4175806 - 417689137731.0
homoprotocatechuate degradation operon regulator hparRPYSC3_RS19285Not AvailableNegative4176932 - 417747120068.5
2-oxo-hept-4-ene-1,7-dioate hydrataseRPYSC3_RS19290Not AvailablePositive4177718 - 417852428913.7
5-carboxymethyl-2-hydroxymuconate delta-isomeraseRPYSC3_RS19295Not AvailablePositive4178546 - 417894414696.6

Displaying genes 3841 – 3850 of 4971 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.