Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rhodopseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rhodopseudomonas |
| Species | Rhodopseudomonas palustris |
| Strain | strain YSC3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative anaerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | aquatic; stratified aquatic environments; terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
933314 bp
Thymine Count
938056 bp
Guanine Count
1753147 bp
Cytosine Count
1747299 bp
Genome Length
5371816 bp
Protein-coding Genes
4905 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s16 | RPYSC3_RS01295 | Not Available | Negative | 271748 - 272068 | 12149.7 |
| signal recognition particle protein | RPYSC3_RS01300 | Not Available | Negative | 272236 - 273780 | 54516.3 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | RPYSC3_RS01305 | Not Available | Positive | 274047 - 274295 | 9339.98 |
| type ii toxin-antitoxin system vapc family toxin | RPYSC3_RS01310 | Not Available | Positive | 274296 - 274703 | 14770.7 |
| mbl fold metallo-hydrolase | RPYSC3_RS01315 | Not Available | Positive | 274708 - 275769 | 39152.6 |
| simpl domain-containing protein | RPYSC3_RS01320 | Not Available | Negative | 275779 - 276477 | 23994.0 |
| gyri-like domain-containing protein | RPYSC3_RS01325 | Not Available | Negative | 276474 - 277295 | 28353.5 |
| diaminopimelate epimerase | RPYSC3_RS01330 | Not Available | Positive | 277531 - 278412 | 31937.1 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | RPYSC3_RS01335 | Not Available | Positive | 278412 - 279683 | 45989.5 |
| class i sam-dependent methyltransferase | RPYSC3_RS01340 | Not Available | Negative | 279693 - 280355 | 23402.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
