Rhodopseudomonas palustris strain YSC3

BacilliMotilefacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Rhodopseudomonas

Description

Rhodopseudomonas palustris strain YSC3 is a gram-negative, bacilli-shaped bacterium that demonstrates mobility via the presence of flagella. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic conditions. It exhibits a versatile habitat preference, being found in aquatic environments, particularly in stratified aquatic settings, as well as in terrestrial locations. The optimal growth temperature for R. palustris strain YSC3 is 25°C, positioning it within the mesophilic temperature range, which is conducive to its metabolic processes. The organism is characterized by a single replicon, indicative of its genomic structure. As a free-living bacterium, R. palustromonas strain YSC3 plays a role in its ecosystem as an independent organism, interacting with various environmental factors. The ecological significance of R. palustris strain YSC3 lies in its adaptability to diverse habitats and its ability to perform photosynthesis under varying oxygen conditions. This versatility not only supports its survival but may also contribute to nutrient cycling and energy flow within aquatic and terrestrial ecosystems. The strain’s genetic material is cataloged under the accession NZ_CP019967.1, providing a reference for further studies on its physiology and ecological roles.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusRhodopseudomonas
SpeciesRhodopseudomonas palustris
Strainstrain YSC3

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Rhodopseudomonas palustris strain YSC3
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperature25
Temperature rangeMesophilic
Habitataquatic; stratified aquatic environments; terrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodopseudomonas palustris strain YSC3 chromosome, complete

Gene Summary

Adenine Count

933314 bp

Thymine Count

938056 bp

Guanine Count

1753147 bp

Cytosine Count

1747299 bp

Genome Length

5371816 bp

Protein-coding Genes

4905 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hydrogenase accessory proteinRPYSC3_RS05055Not AvailablePositive1082112 - 108251313936.8
hydrogenase expression/formation proteinRPYSC3_RS05060Not AvailablePositive1082510 - 108337630725.6
rubredoxinRPYSC3_RS05065Not AvailablePositive1083373 - 10835857690.83
[nife]-hydrogenase assembly chaperone hybeRPYSC3_RS05070Not AvailablePositive1083575 - 108410218139.6
nickel-dependent hydrogenase large subunitRPYSC3_RS05075Not AvailablePositive1084099 - 108520838607.8
hydrogenase maturation nickel metallochaperone hypaRPYSC3_RS05080Not AvailablePositive1085201 - 108554212534.1
hydrogenase nickel incorporation protein hypbRPYSC3_RS05085Not AvailablePositive1085542 - 108649533804.4
carbamoyltransferase hypfRPYSC3_RS05090Not AvailablePositive1086500 - 108877380504.6
hypc/hybg/hupf family hydrogenase formation chaperoneRPYSC3_RS05095Not AvailablePositive1088773 - 10890068078.88
hydrogenase formation protein hypdRPYSC3_RS05100Not AvailablePositive1089003 - 109014541232.7

Displaying genes 1021 – 1030 of 4971 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.