Oceanicoccus sagamiensis strain NBRC 107125

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Spongiibacteraceae

Genus

Oceanicoccus

Description

Oceanicoccus sagamiensis strain NBRC 107125 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number NZ_CP019343.1, providing a reference point for researchers interested in its genetic makeup. This strain belongs to the genus Oceanicoccus, which is known for its relation to marine environments. The presence of only one replicon suggests a streamlined genomic configuration, potentially reflecting adaptations to its ecological niche. In terms of biological significance, Oceanicoccus sagamiensis is likely to play a role in marine microbiomes, contributing to biogeochemical cycles and possibly influencing nutrient cycling in oceanic ecosystems. The genomic traits of this strain may provide insights into its functional capabilities and ecological interactions within its marine habitat. Understanding the characteristics of Oceanicoccus sagamiensis strain NBRC 107125 can enhance our comprehension of microbial diversity in oceanic environments and the ecological roles these microorganisms fulfill.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilySpongiibacteraceae
GenusOceanicoccus
SpeciesOceanicoccus sagamiensis
Strainstrain NBRC 107125

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oceanicoccus sagamiensis strain NBRC 107125 chromosome, complete

Gene Summary

Adenine Count

1167821 bp

Thymine Count

1170864 bp

Guanine Count

1069951 bp

Cytosine Count

1063443 bp

Genome Length

4472079 bp

Protein-coding Genes

4025 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleotide exchange factor grpeBST96_RS03690Not AvailableNegative829011 - 82962522240.9
heat-inducible transcriptional repressor hrcaBST96_RS03695Not AvailableNegative829781 - 83082438101.6
pyridoxamine 5'-phosphate oxidase family proteinBST96_RS03700Not AvailablePositive830986 - 83154321017.3
dna repair protein recnBST96_RS03705Not AvailablePositive831876 - 83353760473.8
ferric iron uptake transcriptional regulatorBST96_RS03710Not AvailableNegative833734 - 83414715673.6
outer membrane protein assembly factor bameBST96_RS03715Not AvailablePositive834220 - 83462415122.0
rnfh family proteinBST96_RS03720Not AvailableNegative834637 - 83494510971.4
type ii toxin-antitoxin system rata family toxinBST96_RS03725Not AvailableNegative834972 - 83542116523.7
sodium-dependent transporterBST96_RS03730Not AvailableNegative835437 - 83681650182.7
ssra-binding protein smpbBST96_RS03735Not AvailablePositive836902 - 83737818333.2

Displaying genes 741 – 750 of 4075 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.