Oceanicoccus sagamiensis strain NBRC 107125

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Spongiibacteraceae

Genus

Oceanicoccus

Description

Oceanicoccus sagamiensis strain NBRC 107125 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number NZ_CP019343.1, providing a reference point for researchers interested in its genetic makeup. This strain belongs to the genus Oceanicoccus, which is known for its relation to marine environments. The presence of only one replicon suggests a streamlined genomic configuration, potentially reflecting adaptations to its ecological niche. In terms of biological significance, Oceanicoccus sagamiensis is likely to play a role in marine microbiomes, contributing to biogeochemical cycles and possibly influencing nutrient cycling in oceanic ecosystems. The genomic traits of this strain may provide insights into its functional capabilities and ecological interactions within its marine habitat. Understanding the characteristics of Oceanicoccus sagamiensis strain NBRC 107125 can enhance our comprehension of microbial diversity in oceanic environments and the ecological roles these microorganisms fulfill.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilySpongiibacteraceae
GenusOceanicoccus
SpeciesOceanicoccus sagamiensis
Strainstrain NBRC 107125

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oceanicoccus sagamiensis strain NBRC 107125 chromosome, complete

Gene Summary

Adenine Count

1167821 bp

Thymine Count

1170864 bp

Guanine Count

1069951 bp

Cytosine Count

1063443 bp

Genome Length

4472079 bp

Protein-coding Genes

4025 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
excinuclease abc subunit uvrbBST96_RS01535Not AvailableNegative341869 - 34389376513.3
Trna-asnNot AvailableNot AvailablePositive344089 - 344163Not Available
hypothetical proteinBST96_RS01545Not AvailableNegative344286 - 3444686702.24
slc13 family permeaseBST96_RS01550Not AvailableNegative344723 - 34650163519.9
dhh family phosphoesteraseBST96_RS01555Not AvailableNegative346541 - 34750334728.4
comea family dna-binding proteinBST96_RS01560Not AvailableNegative347654 - 34794110180.4
orotidine-5'-phosphate decarboxylaseBST96_RS01565Not AvailableNegative348050 - 34874524599.5
lipopolysaccharide assembly protein lapbBST96_RS01570Not AvailableNegative348790 - 34998344835.3
lapa family proteinBST96_RS01575Not AvailableNegative349986 - 35032112166.4
integration host factor subunit betaBST96_RS01580Not AvailableNegative350533 - 35082611103.3

Displaying genes 311 – 320 of 4075 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.