Oceanicoccus sagamiensis strain NBRC 107125

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Spongiibacteraceae

Genus

Oceanicoccus

Description

Oceanicoccus sagamiensis strain NBRC 107125 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number NZ_CP019343.1, providing a reference point for researchers interested in its genetic makeup. This strain belongs to the genus Oceanicoccus, which is known for its relation to marine environments. The presence of only one replicon suggests a streamlined genomic configuration, potentially reflecting adaptations to its ecological niche. In terms of biological significance, Oceanicoccus sagamiensis is likely to play a role in marine microbiomes, contributing to biogeochemical cycles and possibly influencing nutrient cycling in oceanic ecosystems. The genomic traits of this strain may provide insights into its functional capabilities and ecological interactions within its marine habitat. Understanding the characteristics of Oceanicoccus sagamiensis strain NBRC 107125 can enhance our comprehension of microbial diversity in oceanic environments and the ecological roles these microorganisms fulfill.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilySpongiibacteraceae
GenusOceanicoccus
SpeciesOceanicoccus sagamiensis
Strainstrain NBRC 107125

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oceanicoccus sagamiensis strain NBRC 107125 chromosome, complete

Gene Summary

Adenine Count

1167821 bp

Thymine Count

1170864 bp

Guanine Count

1069951 bp

Cytosine Count

1063443 bp

Genome Length

4472079 bp

Protein-coding Genes

4025 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma-54-dependent transcriptional regulatorBST96_RS01105Not AvailablePositive257114 - 25847249846.6
type iv pilin proteinBST96_RS01110Not AvailableNegative258476 - 25894316444.3
vwa domain-containing proteinBST96_RS01115Not AvailableNegative258963 - 262280118891.0
pilx n-terminal domain-containing pilus assembly proteinBST96_RS01120Not AvailableNegative262280 - 26277117637.0
pilw family proteinBST96_RS01125Not AvailableNegative262794 - 26387039182.0
type iv pilus modification protein pilvBST96_RS01130Not AvailableNegative263870 - 26438218100.5
gsph/fimt family pseudopilinBST96_RS01135Not AvailableNegative264382 - 26501422711.4
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseBST96_RS01140Not AvailableNegative265187 - 26613434243.8
fkbp-type peptidyl-prolyl cis-trans isomeraseBST96_RS01145Not AvailableNegative266178 - 26662715925.5
signal peptidase iiBST96_RS01150Not AvailableNegative266655 - 26715818244.3

Displaying genes 221 – 230 of 4075 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.