Oceanicoccus sagamiensis strain NBRC 107125

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Spongiibacteraceae

Genus

Oceanicoccus

Description

Oceanicoccus sagamiensis strain NBRC 107125 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number NZ_CP019343.1, providing a reference point for researchers interested in its genetic makeup. This strain belongs to the genus Oceanicoccus, which is known for its relation to marine environments. The presence of only one replicon suggests a streamlined genomic configuration, potentially reflecting adaptations to its ecological niche. In terms of biological significance, Oceanicoccus sagamiensis is likely to play a role in marine microbiomes, contributing to biogeochemical cycles and possibly influencing nutrient cycling in oceanic ecosystems. The genomic traits of this strain may provide insights into its functional capabilities and ecological interactions within its marine habitat. Understanding the characteristics of Oceanicoccus sagamiensis strain NBRC 107125 can enhance our comprehension of microbial diversity in oceanic environments and the ecological roles these microorganisms fulfill.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilySpongiibacteraceae
GenusOceanicoccus
SpeciesOceanicoccus sagamiensis
Strainstrain NBRC 107125

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oceanicoccus sagamiensis strain NBRC 107125 chromosome, complete

Gene Summary

Adenine Count

1167821 bp

Thymine Count

1170864 bp

Guanine Count

1069951 bp

Cytosine Count

1063443 bp

Genome Length

4472079 bp

Protein-coding Genes

4025 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tyrosine-type recombinase/integraseBST96_RS00605Not AvailableNegative146381 - 14760746398.7
dna mismatch repair protein mutsBST96_RS00610Not AvailablePositive147867 - 15047696098.7
ferredoxin fdxaBST96_RS00615Not AvailablePositive150572 - 15089512141.3
rna polymerase sigma factor rposBST96_RS00620Not AvailableNegative151093 - 15222042285.8
peptidoglycan dd-metalloendopeptidase family proteinBST96_RS00625Not AvailableNegative152427 - 15321228266.1
duf368 domain-containing proteinBST96_RS00630Not AvailableNegative153425 - 15438134448.0
protein-l-isoaspartate(d-aspartate) o-methyltransferaseBST96_RS00635Not AvailableNegative154390 - 15505524580.7
trna pseudouridine(13) synthase trudBST96_RS00640Not AvailableNegative155156 - 15619639166.7
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseBST96_RS00645Not AvailableNegative156196 - 15666916848.2
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseBST96_RS00650Not AvailableNegative156672 - 15737925515.6

Displaying genes 121 – 130 of 4075 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.