Oceanicoccus sagamiensis strain NBRC 107125

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Spongiibacteraceae

Genus

Oceanicoccus

Description

Oceanicoccus sagamiensis strain NBRC 107125 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number NZ_CP019343.1, providing a reference point for researchers interested in its genetic makeup. This strain belongs to the genus Oceanicoccus, which is known for its relation to marine environments. The presence of only one replicon suggests a streamlined genomic configuration, potentially reflecting adaptations to its ecological niche. In terms of biological significance, Oceanicoccus sagamiensis is likely to play a role in marine microbiomes, contributing to biogeochemical cycles and possibly influencing nutrient cycling in oceanic ecosystems. The genomic traits of this strain may provide insights into its functional capabilities and ecological interactions within its marine habitat. Understanding the characteristics of Oceanicoccus sagamiensis strain NBRC 107125 can enhance our comprehension of microbial diversity in oceanic environments and the ecological roles these microorganisms fulfill.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilySpongiibacteraceae
GenusOceanicoccus
SpeciesOceanicoccus sagamiensis
Strainstrain NBRC 107125

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Oceanicoccus sagamiensis strain NBRC 107125 chromosome, complete

Gene Summary

Adenine Count

1167821 bp

Thymine Count

1170864 bp

Guanine Count

1069951 bp

Cytosine Count

1063443 bp

Genome Length

4472079 bp

Protein-coding Genes

4025 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
arylsulfataseBST96_RS00560Not AvailableNegative137133 - 13890265470.6
hypothetical proteinBST96_RS20840Not AvailableNegative138976 - 1391225211.81
hypothetical proteinBST96_RS20845Not AvailableNegative139119 - 1393678700.17
type 1 glutamine amidotransferase domain-containing proteinBST96_RS00570Not AvailableNegative139370 - 14022430631.9
glutathione s-transferase n-terminal domain-containing proteinBST96_RS00575Not AvailableNegative140434 - 14148939380.8
acyl-coa dehydrogenase family proteinBST96_RS00580Not AvailablePositive141810 - 14294641689.6
duf1145 domain-containing proteinBST96_RS00585Not AvailableNegative142930 - 1431909865.92
sdr family oxidoreductaseBST96_RS00590Not AvailablePositive143487 - 14436231677.4
glutathione s-transferase family proteinBST96_RS00595Not AvailableNegative144526 - 14544333687.5
helix-turn-helix transcriptional regulatorBST96_RS00600Not AvailablePositive146063 - 1462697897.47

Displaying genes 111 – 120 of 4075 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.