Tateyamaria omphalii strain DOK1-4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Tateyamaria

Description

Tateyamaria omphalii strain DOK1-4 is characterized by its six replicons, which is notable for its genomic structure. The strain is cataloged under multiple accessions, specifically NZ_CP019312.1, NZ_CP019313.1, NZ_CP019314.1, NZ_CP019315.1, NZ_CP019317.1, and NZ_CP019318.1. This multiplicity of replicons may contribute to the strain's adaptability and metabolic versatility, allowing for efficient regulation of gene expression and resource utilization. The presence of multiple replicons in bacterial genomes is often associated with enhanced genomic flexibility, potentially enabling the organism to thrive in diverse environmental conditions. Although specific ecological roles or habitats of Tateyamaria omphalii strain DOK1-4 are not detailed in the provided data, strains with similar genomic characteristics frequently exhibit a wide range of ecological interactions, including symbiotic relationships or specialized metabolic pathways. In summary, the genomic architecture of Tateyamaria omphalii strain DOK1-4, with its six replicons, suggests a potential for high adaptability and metabolic diversity, which could play a significant role in its ecological interactions. Further research into its specific functions and habitats would provide deeper insights into its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusTateyamaria
SpeciesTateyamaria omphalii
Strainstrain DOK1-4

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tateyamaria omphalii strain DOK1-4 chromosome, complete genome.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3813 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5-bromo-4-chloroindolyl phosphate hydrolysis family proteinBWR18_RS03925Not AvailableNegative803980 - 80487932644.2
m23 family metallopeptidaseBWR18_RS03930Not AvailableNegative804883 - 80548221563.7
pseudouridine synthaseBWR18_RS03935Not AvailableNegative805807 - 80660729850.2
nucleoside deaminaseBWR18_RS03940Not AvailablePositive806664 - 80711315627.5
metal-dependent hydrolaseBWR18_RS03945Not AvailableNegative807171 - 80786324847.5
ceramidase domain-containing proteinBWR18_RS03950Not AvailablePositive808119 - 80879924743.8
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatcBWR18_RS03955Not AvailablePositive808830 - 80911710352.3
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gataBWR18_RS03960Not AvailablePositive809117 - 81060152220.0
excalibur calcium-binding domain-containing proteinBWR18_RS03965Not AvailablePositive810636 - 81145127981.2
n-acetylmuramoyl-l-alanine amidaseBWR18_RS03970Not AvailablePositive811412 - 81212225694.7

Displaying genes 831 – 840 of 4204 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.