Brevirhabdus pacifica strain DY6-4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Brevirhabdus

Description

Brevirhabdus pacifica strain DY6-4 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number NZ_CP019124.1, allowing for its identification and retrieval in genomic databases. This bacterium is part of the genus Brevirhabdus, which is known for its role in various ecological niches. The single replicon suggests a streamlined genome, which may confer advantages in specific environments, such as reduced metabolic burden and enhanced adaptability. Ecologically, Brevirhabdus pacifica may play a role in nutrient cycling, although specific functions and interactions within its ecosystem have not been detailed. The genomic simplicity reflected by its single replicon could be advantageous in environments where rapid growth and reproduction are essential for survival. In summary, Brevirhabdus pacifica strain DY6-4, with its singular replicon and specific genomic identification, represents a unique entity within its ecological context, potentially contributing to the dynamics of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusBrevirhabdus
SpeciesBrevirhabdus pacifica
Strainstrain DY6-4

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatPacific Clarion-Clipperton Fracture Zone
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Brevirhabdus pacifica strain DY6-4 chromosome.

Gene Summary

Adenine Count

526008 bp

Thymine Count

527642 bp

Guanine Count

1068151 bp

Cytosine Count

1061212 bp

Genome Length

3192699 bp

Protein-coding Genes

2945 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorBV394_RS01760Not AvailableNegative367274 - 36817032098.8
c-type cytochromeBV394_RS01765Not AvailablePositive368249 - 36872516435.5
cytochrome cBV394_RS01770Not AvailablePositive368779 - 36971732233.2
lipoyl synthaseBV394_RS01775Not AvailableNegative369751 - 37070135425.6
peroxiredoxinBV394_RS01780Not AvailablePositive371019 - 37156720579.0
hydrogen peroxide-inducible genes activatorBV394_RS01785Not AvailableNegative371742 - 37268033752.1
catalaseBV394_RS01790Not AvailablePositive372777 - 37428856654.9
duf6456 domain-containing proteinBV394_RS01795Not AvailableNegative374377 - 37558843777.3
duf6477 family proteinBV394_RS01800Not AvailablePositive375785 - 37607210812.0
trimethylamine methyltransferase family proteinBV394_RS01805Not AvailableNegative376125 - 37767556031.7

Displaying genes 421 – 430 of 3045 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.