Brevirhabdus pacifica strain DY6-4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Brevirhabdus

Description

Brevirhabdus pacifica strain DY6-4 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number NZ_CP019124.1, allowing for its identification and retrieval in genomic databases. This bacterium is part of the genus Brevirhabdus, which is known for its role in various ecological niches. The single replicon suggests a streamlined genome, which may confer advantages in specific environments, such as reduced metabolic burden and enhanced adaptability. Ecologically, Brevirhabdus pacifica may play a role in nutrient cycling, although specific functions and interactions within its ecosystem have not been detailed. The genomic simplicity reflected by its single replicon could be advantageous in environments where rapid growth and reproduction are essential for survival. In summary, Brevirhabdus pacifica strain DY6-4, with its singular replicon and specific genomic identification, represents a unique entity within its ecological context, potentially contributing to the dynamics of microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusBrevirhabdus
SpeciesBrevirhabdus pacifica
Strainstrain DY6-4

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatPacific Clarion-Clipperton Fracture Zone
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Brevirhabdus pacifica strain DY6-4 chromosome.

Gene Summary

Adenine Count

526008 bp

Thymine Count

527642 bp

Guanine Count

1068151 bp

Cytosine Count

1061212 bp

Genome Length

3192699 bp

Protein-coding Genes

2945 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxal-phosphate-dependent aminotransferase family proteinBV394_RS00820Not AvailablePositive171897 - 17311443667.9
trap transporter substrate-binding proteinBV394_RS00825Not AvailablePositive173264 - 17425635869.8
trap transporter small permeaseBV394_RS00830Not AvailablePositive174359 - 17499723518.2
trap transporter large permeaseBV394_RS00835Not AvailablePositive174997 - 17627744875.8
enoyl-coa hydratase/isomerase family proteinBV394_RS00840Not AvailablePositive176286 - 17705927598.2
caib/baif coa transferase family proteinBV394_RS00845Not AvailablePositive177056 - 17829443637.4
aminotransferase class v-fold plp-dependent enzymeBV394_RS00850Not AvailablePositive178473 - 17975045592.8
Trna-metNot AvailableNot AvailablePositive179807 - 179883Not Available
phosphoribosylformylglycinamidine cyclo-ligaseBV394_RS00860Not AvailablePositive179995 - 18104135693.0
phosphoribosylglycinamide formyltransferaseBV394_RS00865Not AvailablePositive181083 - 18163119516.6

Displaying genes 231 – 240 of 3045 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.