Rahnella sikkimica strain ERMR1:05

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Rahnella

Description

Rahnella sikkimica strain ERMR1:05 is a Gram-negative bacterium characterized by its possession of two replicons. The genomic information for this strain is available under the accessions NZ_CP019062.1 and NZ_CP019064.1. As a member of the genus Rahnella, this strain is likely to exhibit traits common to the group, such as being rod-shaped and possessing the capability to thrive in various environments. The presence of two replicons may indicate a complex genomic organization that can contribute to its adaptability and metabolic versatility. Understanding the genomic structure of Rahnella sikkimica strain ERMR1:05 could provide insights into its ecological roles and potential applications. For instance, the two replicons might facilitate the acquisition of traits beneficial for survival in diverse habitats, including the ability to utilize various substrates or resist environmental stressors. This adaptability can be significant in ecological niches where competition for resources is high. The study of strain ERMR1:05 could also shed light on the evolutionary mechanisms at play within the Rahnella genus. As researchers explore its genetic characteristics and metabolic capabilities, it could reveal important information regarding the ecological interactions it engages in, as well as its potential benefits or impacts on its surrounding environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusRahnella
SpeciesRahnella sikkimica
Strainstrain ERMR1:05

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rahnella sikkimica strain ERMR1:05 plasmid unnamed2, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

217 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acetyl-coa carboxylase, carboxyltransferase subunit betaBV494_RS01480Not AvailablePositive304741 - 30565833320.6
bifunctional tetrahydrofolate synthase/dihydrofolate synthaseBV494_RS01485Not AvailablePositive305831 - 30711446087.7
cell division protein deddBV494_RS01490Not AvailablePositive307107 - 30792828737.6
colicin v production proteinBV494_RS01495Not AvailablePositive308200 - 30869118426.6
amidophosphoribosyltransferaseBV494_RS01500Not AvailablePositive308722 - 31023956437.2
ubix family flavin prenyltransferaseBV494_RS01505Not AvailablePositive310456 - 31102820895.6
lysine/arginine/ornithine abc transporter substrate-binding protein argtBV494_RS01510Not AvailablePositive311352 - 31213428069.6
histidine abc transporter permease hisqBV494_RS01515Not AvailablePositive312241 - 31292724648.8
abc transporter permeaseBV494_RS01520Not AvailablePositive312924 - 31364026569.8
histidine abc transporter atp-binding protein hispBV494_RS01525Not AvailablePositive313670 - 31444328460.5

Displaying genes 701 – 710 of 4495 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.