Rahnella sikkimica strain ERMR1:05

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Rahnella

Description

Rahnella sikkimica strain ERMR1:05 is a Gram-negative bacterium characterized by its possession of two replicons. The genomic information for this strain is available under the accessions NZ_CP019062.1 and NZ_CP019064.1. As a member of the genus Rahnella, this strain is likely to exhibit traits common to the group, such as being rod-shaped and possessing the capability to thrive in various environments. The presence of two replicons may indicate a complex genomic organization that can contribute to its adaptability and metabolic versatility. Understanding the genomic structure of Rahnella sikkimica strain ERMR1:05 could provide insights into its ecological roles and potential applications. For instance, the two replicons might facilitate the acquisition of traits beneficial for survival in diverse habitats, including the ability to utilize various substrates or resist environmental stressors. This adaptability can be significant in ecological niches where competition for resources is high. The study of strain ERMR1:05 could also shed light on the evolutionary mechanisms at play within the Rahnella genus. As researchers explore its genetic characteristics and metabolic capabilities, it could reveal important information regarding the ecological interactions it engages in, as well as its potential benefits or impacts on its surrounding environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusRahnella
SpeciesRahnella sikkimica
Strainstrain ERMR1:05

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rahnella sikkimica strain ERMR1:05 plasmid unnamed2, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

217 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lps export abc transporter atp-binding proteinBV494_RS19105Not AvailableNegative4138720 - 413944526861.5
lipopolysaccharide abc transporter substrate-binding protein lptaBV494_RS19110Not AvailableNegative4139452 - 414000920136.1
lps export abc transporter periplasmic protein lptcBV494_RS19115Not AvailableNegative4139987 - 414055621349.3
3-deoxy-manno-octulosonate-8-phosphatase kdscBV494_RS19120Not AvailableNegative4140553 - 414111920451.9
arabinose-5-phosphate isomerase kdsdBV494_RS19125Not AvailableNegative4141136 - 414212235156.1
calcium/sodium antiporterBV494_RS19130Not AvailableNegative4142142 - 414311934182.2
phospholipid abc transporter atp-binding protein mlafBV494_RS19135Not AvailablePositive4143427 - 414423029251.7
lipid asymmetry maintenance abc transporter permease subunit mlaeBV494_RS19140Not AvailablePositive4144246 - 414502827871.0
outer membrane lipid asymmetry maintenance protein mladBV494_RS19145Not AvailablePositive4145032 - 414558319282.1
phospholipid-binding protein mlacBV494_RS19150Not AvailablePositive4145625 - 414625723811.5

Displaying genes 4061 – 4070 of 4495 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.