Rahnella sikkimica strain ERMR1:05

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Rahnella

Description

Rahnella sikkimica strain ERMR1:05 is a Gram-negative bacterium characterized by its possession of two replicons. The genomic information for this strain is available under the accessions NZ_CP019062.1 and NZ_CP019064.1. As a member of the genus Rahnella, this strain is likely to exhibit traits common to the group, such as being rod-shaped and possessing the capability to thrive in various environments. The presence of two replicons may indicate a complex genomic organization that can contribute to its adaptability and metabolic versatility. Understanding the genomic structure of Rahnella sikkimica strain ERMR1:05 could provide insights into its ecological roles and potential applications. For instance, the two replicons might facilitate the acquisition of traits beneficial for survival in diverse habitats, including the ability to utilize various substrates or resist environmental stressors. This adaptability can be significant in ecological niches where competition for resources is high. The study of strain ERMR1:05 could also shed light on the evolutionary mechanisms at play within the Rahnella genus. As researchers explore its genetic characteristics and metabolic capabilities, it could reveal important information regarding the ecological interactions it engages in, as well as its potential benefits or impacts on its surrounding environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusRahnella
SpeciesRahnella sikkimica
Strainstrain ERMR1:05

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rahnella sikkimica strain ERMR1:05 plasmid unnamed2, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

217 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uracil-dna glycosylaseBV494_RS12330Not AvailablePositive2660791 - 266147725135.9
nucleotide exchange factor grpeBV494_RS12335Not AvailableNegative2661540 - 266212722070.3
nad(+) kinaseBV494_RS12340Not AvailablePositive2662265 - 266314332150.8
dna repair protein recnBV494_RS12345Not AvailablePositive2663239 - 266490062091.8
outer membrane protein assembly factor bameBV494_RS12350Not AvailablePositive2665013 - 266535712618.1
rnfh family proteinBV494_RS12355Not AvailableNegative2665434 - 266571810869.3
type ii toxin-antitoxin system rata family toxinBV494_RS12360Not AvailableNegative2665711 - 266614515944.3
ssra-binding protein smpbBV494_RS12365Not AvailablePositive2666302 - 266678418300.1
Tmrna,resume consensus sequence (at 84): aatagtcgcaaacgacgaNot AvailableNot AvailablePositive2666834 - 2667196Not Available
arsr/smtb family transcription factorBV494_RS12375Not AvailablePositive2667661 - 266797811773.2

Displaying genes 2711 – 2720 of 4495 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.