Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin-disulfide reductase | BJD13_RS06290 | Not Available | Positive | 1061266 - 1062234 | 34325.7 |
| gnat family n-acetyltransferase | BJD13_RS06295 | Not Available | Positive | 1062292 - 1063413 | 42324.9 |
| nad-dependent epimerase/dehydratase family protein | BJD13_RS06300 | Not Available | Positive | 1063682 - 1064725 | 38745.8 |
| leucyl/phenylalanyl-trna--protein transferase | BJD13_RS06305 | Not Available | Positive | 1064856 - 1065608 | 27340.5 |
| translation initiation factor if-1 | BJD13_RS06310 | Not Available | Positive | 1065689 - 1065907 | 8376.16 |
| atp-dependent clp protease atp-binding subunit clpa | BJD13_RS06315 | Not Available | Negative | 1066180 - 1068462 | 83388.2 |
| atp-dependent clp protease adapter clps | BJD13_RS06320 | Not Available | Negative | 1068605 - 1068925 | 12121.5 |
| nudix hydrolase | BJD13_RS06325 | Not Available | Positive | 1069176 - 1069634 | 17161.4 |
| trna 2-thiouridine(34) synthase mnma | BJD13_RS06330 | Not Available | Positive | 1069631 - 1070767 | 41388.6 |
| high frequency lysogenization protein hfld | BJD13_RS06335 | Not Available | Positive | 1070767 - 1071381 | 21965.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
