Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr/acrr family transcriptional regulator | BJD13_RS06240 | Not Available | Positive | 1044633 - 1045265 | 23247.8 |
| 3-hydroxyacyl-coa dehydrogenase/enoyl-coa hydratase family protein | BJD13_RS06245 | Not Available | Positive | 1045290 - 1047662 | 85641.9 |
| acetyl-coa c-acyltransferase | BJD13_RS06250 | Not Available | Positive | 1047824 - 1049029 | 41897.7 |
| fluoride efflux transporter crcb | BJD13_RS06255 | Not Available | Negative | 1049343 - 1049744 | 14064.7 |
| replication-associated recombination protein a | BJD13_RS06260 | Not Available | Negative | 1049924 - 1051297 | 49968.8 |
| hypothetical protein | BJD13_RS25370 | Not Available | Negative | 1051378 - 1051599 | 7832.48 |
| xopz family type iii secretion system effector | BJD13_RS06270 | Not Available | Positive | 1051528 - 1055694 | 151844.0 |
| outer membrane lipoprotein chaperone lola | BJD13_RS06275 | Not Available | Negative | 1055810 - 1056481 | 24711.3 |
| duf3857 domain-containing transglutaminase family protein | BJD13_RS06280 | Not Available | Negative | 1056546 - 1058453 | 70208.9 |
| dna translocase ftsk | BJD13_RS06285 | Not Available | Negative | 1058625 - 1060982 | 84932.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
