Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitrite reductase small subunit nird | BJD13_RS06085 | Not Available | Negative | 1012160 - 1012528 | 12885.7 |
| nitrite reductase large subunit nirb | BJD13_RS06090 | Not Available | Negative | 1012525 - 1014942 | 87625.3 |
| nitrate/nitrite transporter | BJD13_RS06095 | Not Available | Negative | 1015001 - 1016170 | 40324.1 |
| cmpa/nrta family abc transporter substrate-binding protein | BJD13_RS06100 | Not Available | Negative | 1017084 - 1018172 | 38945.6 |
| antar domain-containing response regulator | BJD13_RS06105 | Not Available | Negative | 1018177 - 1018749 | 20583.0 |
| nad(p)-dependent oxidoreductase | BJD13_RS06110 | Not Available | Positive | 1018830 - 1019807 | 34780.3 |
| flavin-containing monooxygenase | BJD13_RS06115 | Not Available | Positive | 1020157 - 1021590 | 53384.5 |
| sdr family nad(p)-dependent oxidoreductase | BJD13_RS06120 | Not Available | Positive | 1021583 - 1022515 | 33687.1 |
| arac family transcriptional regulator | BJD13_RS06125 | Not Available | Negative | 1022615 - 1023697 | 40387.7 |
| hypothetical protein | BJD13_RS06130 | Not Available | Negative | 1023924 - 1024286 | 13369.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
