Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine hydrolase domain-containing protein | BJD13_RS05985 | Not Available | Positive | 975596 - 976969 | 49285.8 |
| lytr/algr family response regulator transcription factor | BJD13_RS05990 | Not Available | Negative | 977114 - 977716 | 22591.5 |
| sensor histidine kinase | BJD13_RS05995 | Not Available | Negative | 977862 - 978851 | 35766.9 |
| hypothetical protein | BJD13_RS06000 | Not Available | Negative | 979048 - 979323 | 9662.63 |
| s8 family serine peptidase | BJD13_RS06005 | Not Available | Positive | 980427 - 983162 | 92812.1 |
| efflux rnd transporter periplasmic adaptor subunit | BJD13_RS06015 | Not Available | Positive | 983650 - 984765 | 39454.6 |
| efflux rnd transporter permease subunit | BJD13_RS06020 | Not Available | Positive | 984758 - 987850 | 111150.0 |
| efflux transporter outer membrane subunit | BJD13_RS06025 | Not Available | Positive | 987847 - 989331 | 50944.1 |
| sensor histidine kinase | BJD13_RS06030 | Not Available | Positive | 989450 - 990472 | 35745.6 |
| response regulator transcription factor | BJD13_RS06035 | Not Available | Positive | 990469 - 991080 | 22424.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
