Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system accessory protein tagj | BJD13_RS05930 | Not Available | Negative | 966141 - 966974 | 30727.5 |
| hcp family type vi secretion system effector | BJD13_RS05935 | Not Available | Negative | 967007 - 967510 | 17844.7 |
| type vi secretion system contractile sheath large subunit | BJD13_RS05940 | Not Available | Negative | 967610 - 969127 | 56073.0 |
| type vi secretion system contractile sheath small subunit | BJD13_RS05945 | Not Available | Negative | 969120 - 969626 | 18194.7 |
| hypothetical protein | BJD13_RS05955 | Not Available | Positive | 970310 - 971272 | 34598.9 |
| nfed family protein | BJD13_RS05960 | Not Available | Positive | 971300 - 971467 | 5947.56 |
| hypothetical protein | BJD13_RS05965 | Not Available | Positive | 971602 - 971880 | 9855.88 |
| gfo/idh/moca family protein | BJD13_RS05970 | Not Available | Negative | 972197 - 973231 | 36992.3 |
| pqq-dependent sugar dehydrogenase | BJD13_RS05975 | Not Available | Negative | 973474 - 974787 | 46223.9 |
| hypothetical protein | BJD13_RS05980 | Not Available | Negative | 974784 - 975200 | 14823.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
