Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system vgr family protein | BJD13_RS05885 | Not Available | Negative | 954910 - 956847 | 70769.0 |
| toll/interleukin-1 receptor domain-containing protein | BJD13_RS05890 | Not Available | Negative | 957023 - 957562 | 20187.1 |
| hypothetical protein | BJD13_RS24935 | Not Available | Negative | 957773 - 957946 | 6322.48 |
| hypothetical protein | BJD13_RS05895 | Not Available | Negative | 958111 - 958653 | 19566.3 |
| hypothetical protein | BJD13_RS05900 | Not Available | Negative | 958860 - 959408 | 20227.1 |
| hypothetical protein | BJD13_RS05905 | Not Available | Negative | 959600 - 960049 | 16759.2 |
| type vi secretion system atpase tssh | BJD13_RS05910 | Not Available | Negative | 960061 - 962763 | 98136.0 |
| type vi secretion system baseplate subunit tssg | BJD13_RS05915 | Not Available | Negative | 962796 - 963806 | 37167.7 |
| type vi secretion system baseplate subunit tssf | BJD13_RS05920 | Not Available | Negative | 963770 - 965647 | 69449.2 |
| type vi secretion system baseplate subunit tsse | BJD13_RS05925 | Not Available | Negative | 965650 - 966153 | 18708.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
