Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Ncrna_class:other | Not Available | Not Available | Positive | 942164 - 942248 | Not Available |
| hypothetical protein | BJD13_RS05840 | Not Available | Negative | 942274 - 942600 | 12561.3 |
| bifunctional serine/threonine-protein kinase/formylglycine-generating enzyme family protein | BJD13_RS05845 | Not Available | Negative | 942597 - 945500 | 105146.0 |
| pp2c family protein-serine/threonine phosphatase | BJD13_RS05850 | Not Available | Negative | 945497 - 946219 | 25895.7 |
| type vi secretion system-associated protein tagf | BJD13_RS05855 | Not Available | Negative | 946216 - 946869 | 22599.0 |
| type vi secretion system membrane subunit tssm | BJD13_RS05860 | Not Available | Negative | 946866 - 950324 | 124085.0 |
| type ivb secretion system protein icmh/dotu | BJD13_RS05865 | Not Available | Negative | 950328 - 951644 | 46999.5 |
| type vi secretion system baseplate subunit tssk | BJD13_RS05870 | Not Available | Negative | 951646 - 952983 | 48373.4 |
| type vi secretion system-associated fha domain protein tagh | BJD13_RS05875 | Not Available | Negative | 952980 - 954365 | 48453.9 |
| duf6931 family protein | BJD13_RS05880 | Not Available | Negative | 954362 - 954901 | 19163.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
