Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | BJD13_RS05785 | Not Available | Negative | 927324 - 930401 | 113210.0 |
| response regulator transcription factor | BJD13_RS05790 | Not Available | Negative | 930398 - 931012 | 22077.1 |
| cytochrome p450 | BJD13_RS05795 | Not Available | Negative | 931073 - 932281 | 44336.3 |
| gmc family oxidoreductase | BJD13_RS05800 | Not Available | Positive | 932885 - 934471 | 57170.2 |
| alpha/beta fold hydrolase | BJD13_RS05805 | Not Available | Positive | 934519 - 935346 | 29011.5 |
| response regulator | BJD13_RS05810 | Not Available | Positive | 935747 - 936526 | 28896.0 |
| cytochrome-c peroxidase | BJD13_RS05815 | Not Available | Positive | 936523 - 937515 | 35126.1 |
| two-component system vira-like sensor kinase | BJD13_RS05820 | Not Available | Positive | 937539 - 939971 | 87617.0 |
| lysr family transcriptional regulator | BJD13_RS05825 | Not Available | Positive | 940085 - 941068 | 34937.2 |
| type vi secretion system protein tssa | BJD13_RS05830 | Not Available | Positive | 941077 - 942105 | 37484.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
