Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS05675 | Not Available | Positive | 911081 - 911224 | 5191.23 |
| hypothetical protein | BJD13_RS05690 | Not Available | Positive | 912611 - 912754 | 5191.23 |
| hypothetical protein | BJD13_RS05705 | Not Available | Positive | 914141 - 914284 | 5191.23 |
| nfed family protein | BJD13_RS25365 | Not Available | Positive | 914701 - 914988 | 10767.8 |
| trax family protein | BJD13_RS05715 | Not Available | Negative | 914959 - 915615 | 23867.8 |
| zonular occludens toxin domain-containing protein | BJD13_RS05720 | Not Available | Negative | 915615 - 916781 | 42695.1 |
| duf2523 family protein | BJD13_RS05725 | Not Available | Negative | 916778 - 917095 | 11545.9 |
| a coat protein | BJD13_RS05730 | Not Available | Negative | 917095 - 918639 | 53711.2 |
| hypothetical protein | BJD13_RS05735 | Not Available | Negative | 918745 - 918999 | 8392.34 |
| hypothetical protein | BJD13_RS05740 | Not Available | Negative | 919005 - 919205 | 7263.75 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
