Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| epoxide hydrolase family protein | BJD13_RS05565 | Not Available | Positive | 893156 - 894310 | 42832.8 |
| hypothetical protein | BJD13_RS05570 | Not Available | Negative | 894479 - 894943 | 16235.8 |
| hypothetical protein | BJD13_RS25200 | Not Available | Negative | 894957 - 895148 | 7093.58 |
| bluf domain-containing protein | BJD13_RS05575 | Not Available | Positive | 895218 - 895694 | 17868.3 |
| o-methyltransferase | BJD13_RS05580 | Not Available | Positive | 895993 - 896583 | 21271.3 |
| acyl-coa dehydrogenase family protein | BJD13_RS24155 | Not Available | Positive | 897450 - 897968 | 18743.5 |
| pig-l deacetylase family protein | BJD13_RS05590 | Not Available | Positive | 897956 - 898714 | 27031.2 |
| class i sam-dependent dna methyltransferase | BJD13_RS05595 | Not Available | Positive | 898711 - 899313 | 22529.7 |
| glycosyltransferase | BJD13_RS05600 | Not Available | Positive | 899310 - 899978 | 23352.7 |
| alpha/beta hydrolase | BJD13_RS05605 | Not Available | Positive | 900268 - 901632 | 48499.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
