Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc transporter zupt | BJD13_RS05515 | Not Available | Negative | 881631 - 882449 | 28620.3 |
| energy transducer tonb | BJD13_RS05520 | Not Available | Negative | 882714 - 883136 | 14512.4 |
| 4a-hydroxytetrahydrobiopterin dehydratase | BJD13_RS05525 | Not Available | Negative | 883133 - 883489 | 13246.7 |
| nfua family fe-s biogenesis protein | BJD13_RS05530 | Not Available | Positive | 883578 - 884177 | 21159.1 |
| hypothetical protein | BJD13_RS05535 | Not Available | Positive | 884191 - 885993 | 63604.7 |
| tetr/acrr family transcriptional regulator | BJD13_RS05540 | Not Available | Negative | 886284 - 886856 | 20949.0 |
| efflux rnd transporter periplasmic adaptor subunit | BJD13_RS05545 | Not Available | Positive | 886980 - 888092 | 39713.6 |
| multidrug efflux rnd transporter permease subunit | BJD13_RS05550 | Not Available | Positive | 888143 - 891268 | 111128.0 |
| tetr/acrr family transcriptional regulator | BJD13_RS05555 | Not Available | Negative | 891417 - 892058 | 23009.9 |
| nmra family nad(p)-binding protein | BJD13_RS05560 | Not Available | Positive | 892240 - 893154 | 32888.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
