Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-gly | Not Available | Not Available | Positive | 856657 - 856732 | Not Available |
| hypothetical protein | BJD13_RS05415 | Not Available | Positive | 857316 - 857549 | 9294.99 |
| tigr03862 family flavoprotein | BJD13_RS05475 | Not Available | Negative | 870032 - 871294 | 45267.0 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | BJD13_RS05480 | Not Available | Negative | 871305 - 871736 | 15052.2 |
| duf6164 family protein | BJD13_RS05485 | Not Available | Positive | 871796 - 872161 | 13409.4 |
| sulfurtransferase | BJD13_RS05490 | Not Available | Positive | 872261 - 873022 | 27797.2 |
| response regulator | BJD13_RS05495 | Not Available | Positive | 873247 - 873894 | 23277.4 |
| rne/rng family ribonuclease | BJD13_RS05500 | Not Available | Negative | 874418 - 878086 | 128203.0 |
| rlua family pseudouridine synthase | BJD13_RS05505 | Not Available | Positive | 878496 - 879482 | 35935.6 |
| duf3300 domain-containing protein | BJD13_RS05510 | Not Available | Negative | 879516 - 881333 | 65425.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
