Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exbd/tolr family protein | BJD13_RS05360 | Not Available | Positive | 847585 - 848049 | 16692.8 |
| lipid a export permease/atp-binding protein msba | BJD13_RS05365 | Not Available | Positive | 848046 - 849815 | 64164.6 |
| tetraacyldisaccharide 4'-kinase | BJD13_RS05370 | Not Available | Positive | 849812 - 850849 | 37648.4 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | BJD13_RS05375 | Not Available | Positive | 851154 - 851933 | 27962.5 |
| low molecular weight protein-tyrosine-phosphatase | BJD13_RS05380 | Not Available | Positive | 851930 - 852394 | 17101.3 |
| hypothetical protein | BJD13_RS05385 | Not Available | Positive | 852418 - 853836 | 50864.4 |
| excinuclease abc subunit uvrc | BJD13_RS05390 | Not Available | Positive | 853833 - 855692 | 67910.2 |
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | BJD13_RS05395 | Not Available | Positive | 855689 - 856321 | 23441.1 |
| Trna-gly | Not Available | Not Available | Positive | 856358 - 856433 | Not Available |
| Trna-cys | Not Available | Not Available | Positive | 856502 - 856575 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
